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TNNT1 troponin T1, slow skeletal type [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113418522, updated on 15-Mar-2024

Summary

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Gene symbol
TNNT1
Gene description
troponin T1, slow skeletal type
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See TNNT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716702.1 (610026..655602)

NW_020716702.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene fucosyltransferase 2 (H blood group) Neighboring gene protein phosphatase 1 regulatory subunit 12C Neighboring gene EPS8 signaling adaptor L1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716702 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables troponin T binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomere organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in slow-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of troponin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
troponin T, slow skeletal muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716702.1 Reference TS10Xv2-PRI

    Range
    610026..655602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026677426.1 → XP_026533211.1  troponin T, slow skeletal muscle isoform X1

    UniProtKB/TrEMBL
    A0A6J1UQH3

  2. XM_026677427.1 → XP_026533212.1  troponin T, slow skeletal muscle isoform X2

    UniProtKB/TrEMBL
    A0A6J1UQG9

  3. XM_026677428.1 → XP_026533213.1  troponin T, slow skeletal muscle isoform X3

    UniProtKB/TrEMBL
    A0A6J1UXQ8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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