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HCFC1 host cell factor C1 [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113417696, updated on 15-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
Ensembl:ENSNSUG00000014919
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716692.1 (1399824..1424226)

NW_020716692.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene ras-related protein Rab-7a-like Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716692 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716692.1 Reference TS10Xv2-PRI

    Range
    1399824..1424226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026676191.1 → XP_026531976.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J1UM67

  2. XM_026676194.1 → XP_026531979.1  host cell factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A6J1UWG3

  3. XM_026676195.1 → XP_026531980.1  host cell factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A6J1UNM5

  4. XM_026676192.1 → XP_026531977.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J1UM11

  5. XM_026676193.1 → XP_026531978.1  host cell factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J1UTV5
    Related
    ENSNSUP00000020525.1, ENSNSUT00000021837.1

  6. XM_026676196.1 → XP_026531981.1  host cell factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A6J1UM72
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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