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ACOD1 aconitate decarboxylase 1 [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113415870, updated on 15-Mar-2024

Summary

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Gene symbol
ACOD1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSNSUG00000008993
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See ACOD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716664.1 (420438..434353, complement)

NW_020716664.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 3 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene potassium channel tetramerization domain containing 12 Neighboring gene LIM domain 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716664 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716664.1 Reference TS10Xv2-PRI

    Range
    420438..434353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026673456.1 → XP_026529241.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A6J1UE34
    Related
    ENSNSUP00000011954.1, ENSNSUT00000012737.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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