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VCAN versican [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113414935, updated on 15-Mar-2024

Summary

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Gene symbol
VCAN
Gene description
versican
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See VCAN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716612.1 (1343519..1440569)

NW_020716612.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 167A Neighboring gene X-ray repair cross complementing 4 Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene EGF like repeats and discoidin domains 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716612 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
versican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716612.1 Reference TS10Xv2-PRI

    Range
    1343519..1440569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026672067.1 → XP_026527852.1  versican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J1UAC7

  2. XM_026672084.1 → XP_026527869.1  versican core protein isoform X2

    UniProtKB/TrEMBL
    A0A6J1UJ22

  3. XM_026672092.1 → XP_026527877.1  versican core protein isoform X3

    UniProtKB/TrEMBL
    A0A6J1UA81

  4. XM_026672076.1 → XP_026527861.1  versican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J1UAC7
Nucleotide Protein
Heading Accession and Version

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