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COL5A2 collagen type V alpha 2 chain [ Notechis scutatus (mainland tiger snake) ]

Gene ID: 113412413, updated on 15-Mar-2024

Summary

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Gene symbol
COL5A2
Gene description
collagen type V alpha 2 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Notechis scutatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Notechis
Orthologs
human mouse all
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Genomic context

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See COL5A2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
54
Annotation release Status Assembly Chr Location
100 current TS10Xv2-PRI (GCF_900518725.1) Unplaced Scaffold NW_020716632.1 (6594309..6768311)

NW_020716632.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113412340 Neighboring gene solute carrier family 40 member 1 Neighboring gene collagen type III alpha 1 chain Neighboring gene GULP PTB domain containing engulfment adaptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020716632 Unplaced Scaffold Reference TS10Xv2-PRI

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type V trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notechis scutatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TS10Xv2-PRI

Genomic

  1. NW_020716632.1 Reference TS10Xv2-PRI

    Range
    6594309..6768311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026668017.1 → XP_026523802.1  collagen alpha-2(V) chain

    UniProtKB/TrEMBL
    A0A6J1TYP0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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