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LOC113363891 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like [ Ctenocephalides felis (cat flea) ]

Gene ID: 113363891, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113363891
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like
See related
EnsemblRapid:LOC113363891
Gene type
protein coding
RefSeq status
MODEL
Organism
Ctenocephalides felis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Siphonaptera; Pulicidae; Archaeopsyllinae; Ctenocephalides
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Genomic context

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See LOC113363891 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM342690v1 (GCF_003426905.1) Unplaced Scaffold NW_020536999.1 (7613784..7650991)

NW_020536999.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113363896 Neighboring gene zinc finger protein 493-like Neighboring gene bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like Neighboring gene zinc finger protein 28-like Neighboring gene zinc finger protein 493-like Neighboring gene zinc transporter 1-like Neighboring gene translation initiation factor eIF-2B subunit epsilon-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020536999 Unplaced Scaffold Reference ASM342690v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ctenocephalides felis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342690v1

Genomic

  1. NW_020536999.1 Reference ASM342690v1

    Range
    7613784..7650991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026606378.1 → XP_026462163.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like

    Related
    XP_026462163.1, XM_026606378.1
    Conserved Domains (2) summary
    pfam00685
    Location:656 → 903
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:89 → 567
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_026606376.1 → XP_026462161.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like

    Related
    XP_026462161.1, XM_026606376.1
    Conserved Domains (2) summary
    pfam00685
    Location:656 → 903
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:89 → 567
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_026606377.1 → XP_026462162.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase-like

    Related
    XP_026462162.1, XM_026606377.1
    Conserved Domains (2) summary
    pfam00685
    Location:656 → 903
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:89 → 567
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases