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LOC113299723 putative callose synthase 8 [ Papaver somniferum (opium poppy) ]

Gene ID: 113299723, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113299723
Gene description
putative callose synthase 8
Locus tag
C5167_038787
Gene type
protein coding
RefSeq status
MODEL
Organism
Papaver somniferum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Genomic context

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See LOC113299723 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
41
Annotation release Status Assembly Chr Location
100 current ASM357369v1 (GCF_003573695.1) 1 NC_039358.1 (125935833..125952199)

Chromosome 1 - NC_039358.1Genomic Context describing neighboring genes Neighboring gene mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like Neighboring gene potassium channel KAT3-like Neighboring gene two-pore potassium channel 3-like Neighboring gene C2 domain-containing protein At1g53590-like Neighboring gene 60S ribosomal protein L18a-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039358.1 Chromosome 1 Reference ASM357369v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative callose synthase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papaver somniferum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357369v1 Primary Assembly

Genomic

  1. NC_039358.1 Reference ASM357369v1 Primary Assembly

    Range
    125935833..125952199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026548798.1 → XP_026404583.1  putative callose synthase 8

    Conserved Domains (3) summary
    pfam02364
    Location:1097 → 1839
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:68 → 175
    Vta1; Vta1 like
    pfam14288
    Location:331 → 443
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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