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LGALS9 galectin 9 [ Ursus arctos (brown bear) ]

Gene ID: 113269017, updated on 15-Mar-2024

Summary

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Gene symbol
LGALS9
Gene description
galectin 9
See related
EnsemblRapid:ENSUARG00005005136
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus arctos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See LGALS9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current UrsArc2.0 (GCF_023065955.2) Unplaced Scaffold NW_026622919.1 (40040226..40056145)
102 previous assembly UrsArc1.0 (GCF_023065955.1) Unplaced Scaffold NW_025929507.1 (5725693..5743470, complement)

NW_026622919.1Genomic Context describing neighboring genes Neighboring gene WD repeat and SOCS box containing 1 Neighboring gene kinase suppressor of ras 1 Neighboring gene uncharacterized LOC123002041 Neighboring gene nitric oxide synthase 2 Neighboring gene U1 small nuclear ribonucleoprotein C-like Neighboring gene LYR motif containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of CD4-positive, alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023065955.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UrsArc2.0 Primary Assembly

Genomic

  1. NW_026622919.1 Reference UrsArc2.0 Primary Assembly

    Range
    40040226..40056145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026517683.4 → XP_026373468.1  galectin-9 isoform X2

    Conserved Domains (1) summary
    smart00908
    Location:22 → 145
    Gal-bind_lectin; Galactoside-binding lectin

  2. XM_026517682.4 → XP_026373467.1  galectin-9 isoform X1

    Related
    ENSUARP00005007542.1
    Conserved Domains (1) summary
    smart00908
    Location:22 → 145
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
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