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GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) [ Ursus arctos (brown bear) ]

Gene ID: 113266361, updated on 15-Mar-2024

Summary

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Gene symbol
GGTA1
Gene description
glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus arctos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See GGTA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_06 current UrsArc2.0 (GCF_023065955.2) Unplaced Scaffold NW_026622852.1 (47788193..47844051, complement)
102 previous assembly UrsArc1.0 (GCF_023065955.1) Unplaced Scaffold NW_025929683.1 (46913906..46981838, complement)

NW_026622852.1Genomic Context describing neighboring genes Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like Neighboring gene uncharacterized LOC130544048 Neighboring gene uncharacterized LOC123001885 Neighboring gene uncharacterized LOC130544050 Neighboring gene uncharacterized LOC125283272

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase
Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023065955.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UrsArc2.0 Primary Assembly

Genomic

  1. NW_026622852.1 Reference UrsArc2.0 Primary Assembly

    Range
    47788193..47844051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026513891.4 → XP_026369676.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    Conserved Domains (1) summary
    cl11394
    Location:104 → 386
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_026513892.4 → XP_026369677.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    Conserved Domains (1) summary
    cl11394
    Location:104 → 386
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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