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SYNJ1 synaptojanin 1 [ Ursus arctos (brown bear) ]

Gene ID: 113265426, updated on 15-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSUARG00005011097
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus arctos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_06 current UrsArc2.0 (GCF_023065955.2) Unplaced Scaffold NW_026623056.1 (82820287..82912233, complement)
102 previous assembly UrsArc1.0 (GCF_023065955.1) Unplaced Scaffold NW_025929905.1 (81170738..81260756, complement)

NW_026623056.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC123001112 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023065955.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UrsArc2.0 Primary Assembly

Genomic

  1. NW_026623056.1 Reference UrsArc2.0 Primary Assembly

    Range
    82820287..82912233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048215005.2 → XP_048070962.1  synaptojanin-1 isoform X4

  2. XM_048215003.2 → XP_048070960.1  synaptojanin-1 isoform X3

  3. XM_057306622.1 → XP_057162605.1  synaptojanin-1 isoform X2

  4. XM_048215004.2 → XP_048070961.1  synaptojanin-1 isoform X4

  5. XM_026513001.4 → XP_026368786.2  synaptojanin-1 isoform X3

  6. XM_057306621.1 → XP_057162604.1  synaptojanin-1 isoform X2

  7. XM_026512854.4 → XP_026368639.2  synaptojanin-1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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