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SGMS2 sphingomyelin synthase 2 [ Ursus arctos (brown bear) ]

Gene ID: 113255540, updated on 15-Mar-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
See related
EnsemblRapid:ENSUARG00005000720
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus arctos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_06 current UrsArc2.0 (GCF_023065955.2) Unplaced Scaffold NW_026622775.1 (3723624..3880604)
102 previous assembly UrsArc1.0 (GCF_023065955.1) Unplaced Scaffold NW_025929783.1 (3785486..3865774)

NW_026622775.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130543324 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene cytochrome b-c1 complex subunit 7-like Neighboring gene cytochrome P450 2U1 Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023065955.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UrsArc2.0 Primary Assembly

Genomic

  1. NW_026622775.1 Reference UrsArc2.0 Primary Assembly

    Range
    3723624..3880604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057309993.1 → XP_057165976.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

  2. XM_057309994.1 → XP_057165977.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

  3. XM_057309996.1 → XP_057165979.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

  4. XM_026499142.3 → XP_026354927.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    Conserved Domains (2) summary
    COG5038
    Location:6 → 175
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_057309995.1 → XP_057165978.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

  6. XM_026499145.4 → XP_026354930.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    Related
    ENSUARP00005001007.1
    Conserved Domains (2) summary
    COG5038
    Location:6 → 175
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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