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LOC113219413 probable small nuclear ribonucleoprotein Sm D2 [ Apis mellifera (honey bee) ]

Gene ID: 113219413, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113219413
Gene description
probable small nuclear ribonucleoprotein Sm D2
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
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Genomic context

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See LOC113219413 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
3
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG1 NC_037638.1 (18559387..18560091)

Linkage Group LG1 - NC_037638.1Genomic Context describing neighboring genes Neighboring gene proteasome subunit alpha type-6 Neighboring gene probable galactose-1-phosphate uridylyltransferase Neighboring gene proteasome subunit alpha type-6-like Neighboring gene probable galactose-1-phosphate uridylyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037638.1 Chromosome LG1 Reference Amel_HAv3.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable small nuclear ribonucleoprotein Sm D2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037638.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    18559387..18560091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026446313.1 → XP_026302098.1  probable small nuclear ribonucleoprotein Sm D2

    UniProtKB/TrEMBL
    A0A7M7MWV5, A0A8B8HEF4
    Conserved Domains (1) summary
    cd01720
    Location:36 → 125
    Sm_D2; Sm protein D2
Nucleotide Protein Strain
Heading Accession and Version

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