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TIMM23B-AGAP6 TIMM23B-AGAP6 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 113218477, updated on 10-Oct-2023

Summary

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Official Symbol
TIMM23B-AGAP6provided by HGNC
Official Full Name
TIMM23B-AGAP6 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:45009
See related
Ensembl:ENSG00000178440 AllianceGenome:HGNC:45009
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00843
Summary
This locus represents naturally-occurring readthrough transcription between the adjacent TIMM23B (translocase of inner mitochondrial membrane 23 homolog B) and AGAP6 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 6) genes. Readthrough transcripts contain portions of the coding sequence for both genes and are predicted to be candidates for nonsense-mediated decay (NMD). [provided by RefSeq, Sep 2018]
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Genomic context

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Location:
10q11.23
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (49942053..50010516)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (50791695..50860159)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (51371399..51770276)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:51038955-51039720 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:51039721-51040484 Neighboring gene ribosomal protein L21 pseudogene 89 Neighboring gene Sharpr-MPRA regulatory region 10647 Neighboring gene poly(ADP-ribose) glycohydrolase Neighboring gene ribosomal protein L35a pseudogene 24 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:51133929-51134429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3355 Neighboring gene small nucleolar RNA, H/ACA box 74C-2 Neighboring gene translocase of inner mitochondrial membrane 23 homolog B Neighboring gene RNA, 5S ribosomal pseudogene 317 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:51784655-51785155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:51787127-51787626 Neighboring gene family with sequence similarity 21, member A pseudogene Neighboring gene solute carrier family 9 member 3 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2365 Neighboring gene WASH complex subunit 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • long intergenic non-protein coding RNA 843

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158654.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

  2. NR_158656.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

  3. NR_158657.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721
    Related
    ENST00000651208.1

  4. NR_158658.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

  5. NR_158659.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

  6. NR_158660.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

  7. NR_158661.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL442003, FO393433, FP565721

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    49942053..50010516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    50791695..50860159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases