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LOC113211030 host cell factor 1-like [ Frankliniella occidentalis (western flower thrips) ]

Gene ID: 113211030, updated on 23-Nov-2023

Summary

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Gene symbol
LOC113211030
Gene description
host cell factor 1-like
Locus tag
FOCC_FOCC011093
Gene type
protein coding
RefSeq status
MODEL
Organism
Frankliniella occidentalis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella
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Genomic context

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See LOC113211030 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Focc_3.1 (GCF_000697945.3) Unplaced Scaffold NW_026267264.1 (399887..405260)
100 previous assembly Focc_2.1 (GCF_000697945.2) Unplaced Scaffold NW_020292494.1 (412616..418988, complement)

NW_026267264.1Genomic Context describing neighboring genes Neighboring gene C-factor Neighboring gene uncharacterized LOC113211033 Neighboring gene nucleolar MIF4G domain-containing protein 1 Neighboring gene trypsin-1 Neighboring gene odorant receptor 4-like Neighboring gene sialin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Frankliniella occidentalis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Focc_3.1 Primary Assembly

Genomic

  1. NW_026267264.1 Reference Focc_3.1 Primary Assembly

    Range
    399887..405260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026429263.2 → XP_026285048.1  host cell factor 1-like

    UniProtKB/TrEMBL
    A0A6J1SVW5
    Conserved Domains (5) summary
    sd00038
    Location:126 → 184
    Kelch; KELCH repeat [structural motif]
    pfam09606
    Location:729 → 960
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl25496
    Location:486 → 787
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26061
    Location:7 → 308
    PLN02193; nitrile-specifier protein
    cl26386
    Location:429 → 568
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
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