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colt carnitine/acylcarnitine carrier protein colt, mitochondrial [ Frankliniella occidentalis (western flower thrips) ]

Gene ID: 113205992, updated on 16-May-2024

Summary

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Gene symbol
colt
Gene description
carnitine/acylcarnitine carrier protein colt, mitochondrial
Locus tag
FOCC_FOCC016042
Gene type
protein coding
RefSeq status
MODEL
Organism
Frankliniella occidentalis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella
Orthologs
fruit fly all
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Genomic context

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See colt in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Focc_3.1 (GCF_000697945.3) Unplaced Scaffold NW_026267579.1 (126026..128012)
100 previous assembly Focc_2.1 (GCF_000697945.2) Unplaced Scaffold NW_020292223.1 (228654..230614, complement)

NW_026267579.1Genomic Context describing neighboring genes Neighboring gene cysteine dioxygenase type 1 Neighboring gene dymeclin Neighboring gene LDL receptor protein 1 Neighboring gene signal recognition particle 68 Neighboring gene BTB/POZ domain-containing protein inc

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the salivary gland transcriptome of Frankliniella occidentalis. Stafford-Banks CA, et al. PLoS One, 2014. PMID 24736614, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
congested-like trachea protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Frankliniella occidentalis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Focc_3.1 Primary Assembly

Genomic

  1. NW_026267579.1 Reference Focc_3.1 Primary Assembly

    Range
    126026..128012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026421856.2 → XP_026277641.1  congested-like trachea protein

    UniProtKB/TrEMBL
    A0A6J1SGC9
    Conserved Domains (1) summary
    pfam00153
    Location:113 → 205
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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