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bark protein bark beetle [ Frankliniella occidentalis (western flower thrips) ]

Gene ID: 113204146, updated on 24-May-2024

Summary

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Gene symbol
bark
Gene description
protein bark beetle
Locus tag
FOCC_FOCC000759
Gene type
protein coding
RefSeq status
MODEL
Organism
Frankliniella occidentalis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella
Orthologs
fruit fly all
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Genomic context

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See bark in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
101 current Focc_3.1 (GCF_000697945.3) Unplaced Scaffold NW_026267134.1 (3472856..3518258)
100 previous assembly Focc_2.1 (GCF_000697945.2) Unplaced Scaffold NW_020292291.1 (730817..763735, complement)

NW_026267134.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 20 Neighboring gene YEATS domain containing 2 homolog D12 Neighboring gene mitochondrial ribosomal protein L4 Neighboring gene uncharacterized LOC113204148 Neighboring gene lipase member H-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the salivary gland transcriptome of Frankliniella occidentalis. Stafford-Banks CA, et al. PLoS One, 2014. PMID 24736614, Free PMC Article
  2. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bark beetle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Frankliniella occidentalis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Focc_3.1 Primary Assembly

Genomic

  1. NW_026267134.1 Reference Focc_3.1 Primary Assembly

    Range
    3472856..3518258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026419179.2 → XP_026274964.1  protein bark beetle isoform X1

    UniProtKB/TrEMBL
    A0A6J1S1C7
    Conserved Domains (5) summary
    smart00034
    Location:2606 → 2701
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00202
    Location:1077 → 1183
    SR; Scavenger receptor Cys-rich
    cl00049
    Location:499 → 582
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00530
    Location:1936 → 2029
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:597 → 692
    Beta_helix; Right handed beta helix region

  2. XM_026419180.2 → XP_026274965.1  protein bark beetle isoform X2

    UniProtKB/TrEMBL
    A0A6J1S6V7
    Conserved Domains (5) summary
    smart00034
    Location:2601 → 2696
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00202
    Location:1077 → 1183
    SR; Scavenger receptor Cys-rich
    cl00049
    Location:499 → 582
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00530
    Location:1936 → 2029
    SRCR; Scavenger receptor cysteine-rich domain
    pfam13229
    Location:597 → 692
    Beta_helix; Right handed beta helix region
Nucleotide Protein
Heading Accession and Version

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