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LOC113201720 protein hairy [ Frankliniella occidentalis (western flower thrips) ]

Gene ID: 113201720, updated on 23-Nov-2023

Summary

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Gene symbol
LOC113201720
Gene description
protein hairy
Locus tag
FOCC_FOCC014506
Gene type
protein coding
RefSeq status
MODEL
Organism
Frankliniella occidentalis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella
Also known as
hairy
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Genomic context

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See LOC113201720 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Focc_3.1 (GCF_000697945.3) Unplaced Scaffold NW_026267428.1 (184920..188789)
100 previous assembly Focc_2.1 (GCF_000697945.2) Unplaced Scaffold NW_020292218.1 (219989..223777, complement)

NW_026267428.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113218276 Neighboring gene uncharacterized LOC113218287 Neighboring gene uncharacterized LOC113218081 Neighboring gene uncharacterized LOC113201726 Neighboring gene uncharacterized LOC127750981 Neighboring gene MRN complex-interacting protein Neighboring gene 26S proteasome regulatory subunit Rpt6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the salivary gland transcriptome of Frankliniella occidentalis. Stafford-Banks CA, et al. PLoS One, 2014. PMID 24736614, Free PMC Article
  2. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein hairy

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Frankliniella occidentalis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Focc_3.1 Primary Assembly

Genomic

  1. NW_026267428.1 Reference Focc_3.1 Primary Assembly

    Range
    184920..188789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026415598.2 → XP_026271383.1  protein hairy

    UniProtKB/TrEMBL
    A0A6J1RSK1
    Conserved Domains (2) summary
    pfam07527
    Location:115 → 148
    Hairy_orange; Hairy Orange
    cd18913
    Location:38 → 104
    bHLH-O_hairy_like; basic helix-loop-helix-orange (bHLH-O) domain found in Drosophila melanogaster protein hairy, protein deadpan and similar proteins
Nucleotide Protein
Heading Accession and Version

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