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tdrd3 tudor domain containing 3 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113138121, updated on 15-Mar-2024

Summary

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Gene symbol
tdrd3
Gene description
tudor domain containing 3
See related
Ensembl:ENSMAMG00000003998
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See tdrd3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 3 NC_046635.1 (6702931..6716578, complement)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535922.1 (8686002..8699649)

Chromosome 3 - NC_046635.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113138288 Neighboring gene protocadherin 20 Neighboring gene diaphanous related formin 3 Neighboring gene protocadherin 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tudor domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046635.1 Reference fMasArm1.2 Primary Assembly

    Range
    6702931..6716578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026320281.1 → XP_026176066.1  tudor domain-containing protein 3

    UniProtKB/TrEMBL
    A0A3Q3L8N1, A0A7N8X9J2
    Related
    ENSMAMP00000005874.1, ENSMAMT00000006038.2
    Conserved Domains (3) summary
    cd04508
    Location:693 → 741
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cd14282
    Location:290 → 328
    UBA_TDRD3; UBA domain of Tudor domain-containing protein 3 (TDRD3) and similar proteins
    pfam08585
    Location:40 → 164
    RMI1_N; RecQ mediated genome instability protein
Nucleotide Protein
Heading Accession and Version

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