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prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113133314, updated on 15-Mar-2024

Summary

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Gene symbol
prpf18
Gene description
PRP18 pre-mRNA processing factor 18 homolog (yeast)
See related
Ensembl:ENSMAMG00000006610
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See prpf18 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 6 NC_046638.1 (22992410..22997871)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535905.1 (22992410..22997871)

Chromosome 6 - NC_046638.1Genomic Context describing neighboring genes Neighboring gene selenophosphate synthetase 1 Neighboring gene BEN domain containing 7 Neighboring gene transcription factor Maf-like Neighboring gene WW domain containing oxidoreductase Neighboring gene nuclear factor of activated T-cells 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18
Names
pre-mRNA processing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046638.1 Reference fMasArm1.2 Primary Assembly

    Range
    22992410..22997871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026312057.1 → XP_026167842.1  pre-mRNA-splicing factor 18 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3RTY9, A0A7N8Y4S9
    Related
    ENSMAMP00000058080.1, ENSMAMT00000039652.1
    Conserved Domains (2) summary
    smart00500
    Location:87 → 130
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:203 → 339
    Prp18; Prp18 domain

  2. XM_026312058.1 → XP_026167843.1  pre-mRNA-splicing factor 18 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3RTY9, A0A7N9AZ79
    Related
    ENSMAMP00000058159.1, ENSMAMT00000053694.1
    Conserved Domains (2) summary
    smart00500
    Location:78 → 121
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:194 → 330
    Prp18; Prp18 domain
Nucleotide Protein
Heading Accession and Version

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