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c1d C1D nuclear receptor corepressor [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113131350, updated on 15-Mar-2024

Summary

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Gene symbol
c1d
Gene description
C1D nuclear receptor corepressor
See related
Ensembl:ENSMAMG00000022156
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See c1d in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 15 NC_046647.1 (19662480..19664292)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535896.1 (19662480..19664292)

Chromosome 15 - NC_046647.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113132025 Neighboring gene uncharacterized LOC113132017 Neighboring gene ETAA1 activator of ATR kinase b Neighboring gene uncharacterized LOC113131955

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046647.1 Reference fMasArm1.2 Primary Assembly

    Range
    19662480..19664292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026308463.1 → XP_026164248.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A3Q3NB37
    Related
    ENSMAMP00000032921.1, ENSMAMT00000033776.2
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 95
    Sas10_Utp3; Sas10/Utp3/C1D family

  2. XM_026308464.1 → XP_026164249.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A3Q3NB37
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 95
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
Heading Accession and Version

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