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prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113124449, updated on 15-Mar-2024

Summary

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Gene symbol
prpf4
Gene description
pre-mRNA splicing tri-snRNP complex factor PRPF4
See related
Ensembl:ENSMAMG00000020141
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See prpf4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 12 NC_046644.1 (20977305..20987332)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535968.1 (20977316..20987332)

Chromosome 12 - NC_046644.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113124904 Neighboring gene fer (fps/fes related) tyrosine kinase Neighboring gene cell division cycle 26 homolog Neighboring gene APC regulator of WNT signaling pathway Neighboring gene FSD1-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U4 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp4
Names
PRP4 pre-mRNA processing factor 4 homolog
pre-mRNA processing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046644.1 Reference fMasArm1.2 Primary Assembly

    Range
    20977305..20987332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026297313.2 → XP_026153098.1  U4/U6 small nuclear ribonucleoprotein Prp4

    UniProtKB/TrEMBL
    A0A3Q3SSL3
    Conserved Domains (3) summary
    smart00500
    Location:91 → 129
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:221 → 507
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:222 → 259
    7WD40; WD40 repeat [structural motif]

  2. XM_026297314.2 → XP_026153099.1  U4/U6 small nuclear ribonucleoprotein Prp4

    UniProtKB/TrEMBL
    A0A3Q3SSL3
    Related
    ENSMAMP00000029860.2, ENSMAMT00000030634.2
    Conserved Domains (3) summary
    smart00500
    Location:91 → 129
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:221 → 507
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:222 → 259
    7WD40; WD40 repeat [structural motif]

  3. XM_026297317.2 → XP_026153102.1  U4/U6 small nuclear ribonucleoprotein Prp4

    UniProtKB/TrEMBL
    A0A3Q3SSL3
    Conserved Domains (3) summary
    smart00500
    Location:91 → 129
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:221 → 507
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:222 → 259
    7WD40; WD40 repeat [structural motif]

  4. XM_026297315.1 → XP_026153100.1  U4/U6 small nuclear ribonucleoprotein Prp4

    UniProtKB/TrEMBL
    A0A3Q3SSL3
    Conserved Domains (3) summary
    smart00500
    Location:91 → 129
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    cd00200
    Location:221 → 507
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:222 → 259
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_003295053.2 RNA Sequence

    Related
    ENSMAMT00000030640.2
Nucleotide Protein
Heading Accession and Version

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