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pop1 POP1 homolog, ribonuclease P/MRP subunit [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113122733, updated on 15-Mar-2024

Summary

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Gene symbol
pop1
Gene description
POP1 homolog, ribonuclease P/MRP subunit
See related
Ensembl:ENSMAMG00000004040
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See pop1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 16 NC_046648.1 (8652356..8660851)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535965.1 (21379750..21388245)

Chromosome 16 - NC_046648.1Genomic Context describing neighboring genes Neighboring gene skin secretory protein xP2-like Neighboring gene reactive intermediate imine deaminase A homolog Neighboring gene NIPA like domain containing 2 Neighboring gene potassium voltage-gated channel modifier subfamily S member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonucleases P/MRP protein subunit POP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046648.1 Reference fMasArm1.2 Primary Assembly

    Range
    8652356..8660851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026294269.1 → XP_026150054.1  ribonucleases P/MRP protein subunit POP1

    UniProtKB/TrEMBL
    A0A3Q3L8T7, A0A7N8YC96
    Related
    ENSMAMP00000005929.1, ENSMAMT00000006098.2
    Conserved Domains (2) summary
    pfam06978
    Location:102 → 247
    POP1; Ribonucleases P/MRP protein subunit POP1
    pfam08170
    Location:607 → 698
    POPLD; POPLD (NUC188) domain
Nucleotide Protein
Heading Accession and Version

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