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c4b complement C4B (Chido/Rodgers blood group) [ Carassius auratus (goldfish) ]

Gene ID: 113116298, updated on 15-Mar-2024

Summary

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Gene symbol
c4b
Gene description
complement C4B (Chido/Rodgers blood group)
See related
Ensembl:ENSCARG00000031632
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
zebrafish all
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Genomic context

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See c4b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
42
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 16 NC_039258.1 (16063732..16084365)

Chromosome 16 - NC_039258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113116836 Neighboring gene uncharacterized LOC113116297 Neighboring gene tenascin XBa Neighboring gene steroid 21-hydroxylase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039258.1 Chromosome 16 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune gene discovery in the crucian carp Carassius auratus. Rhee JS, et al. Fish Shellfish Immunol, 2014 Jan. PMID 24287371
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in complement activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement C4-B-like; complement C4-like
Names
complement 4B (Chido blood group)
complement component C4-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039258.1 Reference ASM336829v1 Primary Assembly

    Range
    16063732..16084365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026284379.1 → XP_026140164.1  complement C4-B-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6R371
    Related
    ENSCARP00000070064.1, ENSCART00000074694.1

  2. XM_026284380.1 → XP_026140165.1  complement C4-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6R556
    Related
    ENSCARP00000070421.1, ENSCART00000075091.1
Nucleotide Protein Strain
Heading Accession and Version

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