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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Carassius auratus (goldfish) ]

Gene ID: 113110814, updated on 15-Mar-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
See related
Ensembl:ENSCARG00000010622
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 11
Exon count:
50
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 11 NC_039253.1 (3808777..3900959)

Chromosome 11 - NC_039253.1Genomic Context describing neighboring genes Neighboring gene bicaudal D homolog 2 (Drosophila) Neighboring gene transketolase a Neighboring gene parapinopsin-like Neighboring gene calcium channel, voltage dependent, alpha2/delta subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039253.1 Chromosome 11 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of calcium channel alpha1 subunit mRNA expressed in retinal bipolar neurons. Logiudice L, et al. Mol Vis, 2006 Mar 17. PMID 16568031, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1D-like
Names
L-type calcium channel alpha 1 subunit Cav1.3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039253.1 Reference ASM336829v1 Primary Assembly

    Range
    3808777..3900959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026275002.1 → XP_026130787.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6QC25

  2. XM_026275003.1 → XP_026130788.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6QB61

  3. XM_026275004.1 → XP_026130789.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X3

    UniProtKB/TrEMBL
    A0A6P6QB63

  4. XM_026275006.1 → XP_026130791.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X5

    UniProtKB/TrEMBL
    A0A6P6QBL7

  5. XM_026275009.1 → XP_026130794.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X8

    UniProtKB/TrEMBL
    A0A6P6QB68

  6. XM_026275007.1 → XP_026130792.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X6

    UniProtKB/TrEMBL
    A0A6P6QC30

  7. XM_026275012.1 → XP_026130797.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X11

    UniProtKB/TrEMBL
    A0A6P6QC35

  8. XM_026275011.1 → XP_026130796.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X10

    UniProtKB/TrEMBL
    A0A6P6QBM1

  9. XM_026275005.1 → XP_026130790.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X4

    UniProtKB/TrEMBL
    A0A6P6QF60

  10. XM_026275008.1 → XP_026130793.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X7

    UniProtKB/TrEMBL
    A0A6P6QB66

  11. XM_026275010.1 → XP_026130795.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X9

    UniProtKB/TrEMBL
    A0A6P6QF65
    Related
    ENSCARP00000028029.1, ENSCART00000029394.1
Nucleotide Protein Strain
Heading Accession and Version

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