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LOC113107030 host cell factor 1-like [ Carassius auratus (goldfish) ]

Gene ID: 113107030, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113107030
Gene description
host cell factor 1-like
See related
Ensembl:ENSCARG00000013922
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC113107030 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 8 NC_039250.1 (4401356..4421507)

Chromosome 8 - NC_039250.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2-like Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene cyclin-dependent kinase 20-like Neighboring gene transcription factor GATA-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039250.1 Chromosome 8 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039250.1 Reference ASM336829v1 Primary Assembly

    Range
    4401356..4421507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026269157.1 → XP_026124942.1  host cell factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6PV09
    Conserved Domains (5) summary
    sd00038
    Location:194 → 246
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:259 → 325
    Kelch_3; Galactose oxidase, central domain
    cl21522
    Location:1787 → 1889
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl26061
    Location:9 → 270
    PLN02193; nitrile-specifier protein
    cl26464
    Location:398 → 604
    Atrophin-1; Atrophin-1 family

  2. XM_026269159.1 → XP_026124944.1  host cell factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6PVG6
    Related
    ENSCARP00000032787.1, ENSCART00000034318.1
    Conserved Domains (5) summary
    sd00038
    Location:194 → 246
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:259 → 325
    Kelch_3; Galactose oxidase, central domain
    cl21522
    Location:1782 → 1884
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25496
    Location:398 → 781
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26061
    Location:9 → 270
    PLN02193; nitrile-specifier protein

  3. XM_026269158.1 → XP_026124943.1  host cell factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6PV09
    Conserved Domains (5) summary
    sd00038
    Location:194 → 246
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:259 → 325
    Kelch_3; Galactose oxidase, central domain
    cl21522
    Location:1787 → 1889
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl26061
    Location:9 → 270
    PLN02193; nitrile-specifier protein
    cl26464
    Location:398 → 604
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
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