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LOC113080132 host cell factor 1-like [ Carassius auratus (goldfish) ]

Gene ID: 113080132, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113080132
Gene description
host cell factor 1-like
See related
Ensembl:ENSCARG00000057360
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC113080132 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) Unplaced Scaffold NW_020525839.1 (65543..92166)

NW_020525839.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2-like Neighboring gene interleukin-1 receptor-associated kinase 1-like Neighboring gene cyclin-dependent kinase 20 Neighboring gene trans-acting T-cell-specific transcription factor GATA-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020525839 Unplaced Scaffold Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NW_020525839.1 Reference ASM336829v1 Primary Assembly

    Range
    65543..92166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026252356.1 → XP_026108141.1  host cell factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A6P6NJ25
    Related
    ENSCARP00000111792.1, ENSCART00000125078.1

  2. XM_026252355.1 → XP_026108140.1  host cell factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6P6NG85
    Related
    ENSCARP00000111478.1, ENSCART00000124754.1

  3. XM_026252358.1 → XP_026108143.1  host cell factor 1-like isoform X4

    UniProtKB/TrEMBL
    A0A6P6NHQ0
    Related
    ENSCARP00000111818.1, ENSCART00000125105.1

  4. XM_026252357.1 → XP_026108142.1  host cell factor 1-like isoform X3

    UniProtKB/TrEMBL
    A0A6P6NGR5
    Related
    ENSCARP00000111668.1, ENSCART00000124953.1
Nucleotide Protein Strain
Heading Accession and Version

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