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chrne cholinergic receptor, nicotinic, epsilon [ Carassius auratus (goldfish) ]

Gene ID: 113069331, updated on 15-Mar-2024

Summary

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Gene symbol
chrne
Gene description
cholinergic receptor, nicotinic, epsilon
See related
Ensembl:ENSCARG00000029689
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
zebrafish all
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Genomic context

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See chrne in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) Unplaced Scaffold NW_020523362.1 (20677..34562)

NW_020523362.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium-transporting ATPase subunit beta-2-like Neighboring gene ceramide-1-phosphate transfer protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020523362 Unplaced Scaffold Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit gamma-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NW_020523362.1 Reference ASM336829v1 Primary Assembly

    Range
    20677..34562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026242336.1 → XP_026098121.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  2. XM_026242337.1 → XP_026098122.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  3. XM_026242340.1 → XP_026098125.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  4. XM_026242335.1 → XP_026098120.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  5. XM_026242338.1 → XP_026098123.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  6. XM_026242339.1 → XP_026098124.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26

  7. XM_026242341.1 → XP_026098126.1  acetylcholine receptor subunit gamma-like

    UniProtKB/TrEMBL
    A0A6P6MN26
    Related
    ENSCARP00000066205.1, ENSCART00000070317.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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