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LOC113069028 transmembrane and TPR repeat-containing protein 2-like [ Carassius auratus (goldfish) ]

Gene ID: 113069028, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113069028
Gene description
transmembrane and TPR repeat-containing protein 2-like
See related
Ensembl:ENSCARG00000060122
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC113069028 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) Unplaced Scaffold NW_020523304.1 (8608..19472)

NW_020523304.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113069021 Neighboring gene scavenger receptor cysteine-rich type 1 protein M130-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020523304 Unplaced Scaffold Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NW_020523304.1 Reference ASM336829v1 Primary Assembly

    Range
    8608..19472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026242006.1 → XP_026097791.1  transmembrane and TPR repeat-containing protein 2-like

    UniProtKB/TrEMBL
    A0A6P6MP27
    Related
    ENSCARP00000115712.1, ENSCART00000129996.1
Nucleotide Protein Strain
Heading Accession and Version

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