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sfrp1a secreted frizzled-related protein 1a [ Carassius auratus (goldfish) ]

Gene ID: 113049434, updated on 15-Mar-2024

Summary

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Gene symbol
sfrp1a
Gene description
secreted frizzled-related protein 1a
See related
Ensembl:ENSCARG00000012072
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
zebrafish all
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Genomic context

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See sfrp1a in Genome Data Viewer
Location:
chromosome: 30
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 30 NC_039272.1 (16791784..16801623)

Chromosome 30 - NC_039272.1Genomic Context describing neighboring genes Neighboring gene D(1) dopamine receptor-like Neighboring gene lysyl oxidase-like 2b Neighboring gene zinc finger, matrin-type 4a Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039272.1 Chromosome 30 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039272.1 Reference ASM336829v1 Primary Assembly

    Range
    16791784..16801623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026211783.1 → XP_026067568.1  secreted frizzled-related protein 1-like

    UniProtKB/TrEMBL
    A0A6P6K5J2
    Related
    ENSCARP00000027126.1, ENSCART00000028441.1
Nucleotide Protein Strain
Heading Accession and Version

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