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LOC113045085 kin of IRRE-like protein 1 [ Carassius auratus (goldfish) ]

Gene ID: 113045085, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113045085
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSCARG00000006933
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC113045085 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 27 NC_039269.1 (2760496..2791585)

Chromosome 27 - NC_039269.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 3-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene U6 spliceosomal RNA Neighboring gene nacht, lrr and pyd domains-containing protein 1b-like Neighboring gene zinc finger E-box-binding homeobox 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039269.1 Chromosome 27 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039269.1 Reference ASM336829v1 Primary Assembly

    Range
    2760496..2791585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026205233.1 → XP_026061018.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6JMU2
    Related
    ENSCARP00000015194.1, ENSCART00000016045.1

  2. XM_026205235.1 → XP_026061020.1  kin of IRRE-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P6JN47

  3. XM_026205231.1 → XP_026061016.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6JMH1
    Related
    ENSCARP00000015159.1, ENSCART00000016010.1

  4. XM_026205232.1 → XP_026061017.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6JP12
    Related
    ENSCARP00000015212.1, ENSCART00000016063.1
Nucleotide Protein Strain
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