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rpl22 ribosomal protein L22 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113022103, updated on 15-Mar-2024

Summary

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Gene symbol
rpl22
Gene description
ribosomal protein L22
See related
Ensembl:ENSACLG00000003093
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See rpl22 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 5 NC_039306.1 (10412795..10416106, complement)

Chromosome 5 - NC_039306.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 10-like a Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene chromodomain helicase DNA binding protein 5 Neighboring gene ring finger protein 207a Neighboring gene ZPR1 zinc finger Neighboring gene angiotensin II receptor-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039306.1 Chromosome 5 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039306.1 Reference fAstCal1.2 Primary Assembly

    Range
    10412795..10416106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026167164.1 → XP_026022949.1  60S ribosomal protein L22-like

    UniProtKB/TrEMBL
    A0A3P8NJ26
    Related
    ENSACLP00000004628.1, ENSACLT00000004721.1
    Conserved Domains (1) summary
    pfam01776
    Location:45 → 147
    Ribosomal_L22e; Ribosomal L22e protein family
Nucleotide Protein
Heading Accession and Version

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