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SGCG sarcoglycan gamma [ Dromaius novaehollandiae (emu) ]

Gene ID: 112988361, updated on 6-Jun-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
Ensembl:ENSDNVG00000008823
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 1 NC_088098.1 (198217027..198360725, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453404.1 (4321602..4463005, complement)

Chromosome 1 - NC_088098.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 19 Neighboring gene uncharacterized LOC112988362 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC112988353 Neighboring gene uncharacterized LOC135330395

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088098.1 Reference bDroNov1.hap1

    Range
    198217027..198360725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026108834.2 → XP_025964619.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_026108835.2 → XP_025964620.1  gamma-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 238
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_026108830.2 → XP_025964615.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45
    Related
    ENSDNVP00000012484.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_064505009.1 → XP_064361079.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45

  5. XM_026108831.2 → XP_025964616.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45
    Related
    ENSDNVP00000012498.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_026108833.2 → XP_025964618.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_026108832.2 → XP_025964617.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_064505011.1 → XP_064361081.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45

  9. XM_064505012.1 → XP_064361082.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45

  10. XM_064505010.1 → XP_064361080.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A7K9AH45

  11. XM_064505013.1 → XP_064361083.1  gamma-sarcoglycan isoform X2

RNA

  1. XR_010387304.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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