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B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) [ Dromaius novaehollandiae (emu) ]

Gene ID: 112986451, updated on 10-Oct-2024

Summary

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Gene symbol
B3GALNT1
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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See B3GALNT1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 9 NC_088106.1 (3610442..3659998)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453327.1 (76418..117364)

Chromosome 9 - NC_088106.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112986424 Neighboring gene tripartite motif containing 59 Neighboring gene small Cajal body-specific RNA 7 Neighboring gene karyopherin subunit alpha 4 Neighboring gene ARF like GTPase 14 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L Neighboring gene NMD3 ribosome export adaptor Neighboring gene otolin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088106.1 Reference bDroNov1.hap1

    Range
    3610442..3659998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064516573.1 → XP_064372643.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

  2. XM_026105725.2 → XP_025961510.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A7K9AP64
    Conserved Domains (1) summary
    cl21608
    Location:80 → 273
    Galactosyl_T; Galactosyltransferase

  3. XM_064516574.1 → XP_064372644.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

  4. XM_064516572.1 → XP_064372642.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

  5. XM_026105723.2 → XP_025961508.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A7K9AP64
    Conserved Domains (1) summary
    cl21608
    Location:80 → 273
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_010390420.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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