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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Dromaius novaehollandiae (emu) ]

Gene ID: 112984559, updated on 19-Apr-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSDNVG00000005815
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 23
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 23 NC_088120.1 (3744309..3753629, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453070.1 (494042..503287, complement)

Chromosome 23 - NC_088120.1Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088120.1 Reference bDroNov1.hap1

    Range
    3744309..3753629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026102505.2 → XP_025958290.2  acid sphingomyelinase-like phosphodiesterase 3b

RNA

  1. XR_003259526.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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