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LOC112978761 serine palmitoyltransferase 1 [ Dromaius novaehollandiae (emu) ]

Gene ID: 112978761, updated on 19-Apr-2024

Summary

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Gene symbol
LOC112978761
Gene description
serine palmitoyltransferase 1
See related
Ensembl:ENSDNVG00000010335
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Also known as
SPTLC1
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Genomic context

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See LOC112978761 in Genome Data Viewer
Location:
chromosome: W
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) W NC_088130.1 (21182419..21218733, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020451650.1 (5110087..5146276)

Chromosome W - NC_088130.1Genomic Context describing neighboring genes Neighboring gene nuclear factor interleukin-3-regulated protein Neighboring gene tyrosine-protein kinase transmembrane receptor ROR2 Neighboring gene uncharacterized LOC135324236 Neighboring gene CDC42 small effector protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1
Names
serine palmitoyltransferase long chain base subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088130.1 Reference bDroNov1.hap1

    Range
    21182419..21218733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026092453.2 → XP_025948238.1  serine palmitoyltransferase 1

    UniProtKB/TrEMBL
    A0A8C4JWJ3, A0A8C4JZI0
    Related
    ENSDNVP00000014688.1
    Conserved Domains (1) summary
    cl18945
    Location:27 → 475
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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