U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112978656 aspartyl/asparaginyl beta-hydroxylase-like [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112978656, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112978656
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112978656 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020451271.1 (1609020..1674335, complement)

NW_020451271.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene clavesin 1 Neighboring gene aspartyl/asparaginyl beta-hydroxylase-like Neighboring gene sodium/potassium transporting ATPase interacting 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020451271 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020451271.1 Reference aptRow1

    Range
    1609020..1674335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026092299.1 → XP_025948084.1  aspartyl/asparaginyl beta-hydroxylase-like

    Conserved Domains (4) summary
    sd00006
    Location:247 → 272
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:415 → 568
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26002
    Location:258 → 357
    TPR_11; TPR repeat
    cl26250
    Location:166 → 279
    TPR_6; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases