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LOC112977285 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112977285, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112977285
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
See related
Ensembl:ENSARWG00000006903
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
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Genomic context

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See LOC112977285 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020451111.1 (83466..252191, complement)

NW_020451111.1Genomic Context describing neighboring genes Neighboring gene 2-hydroxyacylsphingosine 1-beta-galactosyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020451111 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020451111.1 Reference aptRow1

    Range
    83466..252191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026089463.1 → XP_025945248.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    Related
    ENSARWP00000009921.1, ENSARWT00000011290.1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

RNA

  1. XR_003257434.1 RNA Sequence

  2. XR_003257433.1 RNA Sequence

  3. XR_003257438.1 RNA Sequence

  4. XR_003257440.1 RNA Sequence

  5. XR_003257432.1 RNA Sequence

  6. XR_003257435.1 RNA Sequence

  7. XR_003257437.1 RNA Sequence

  8. XR_003257439.1 RNA Sequence

  9. XR_003257436.1 RNA Sequence

Nucleotide Protein
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