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IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112977077, updated on 15-Mar-2024

Summary

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Gene symbol
IDH1
Gene description
isocitrate dehydrogenase (NADP(+)) 1
See related
Ensembl:ENSARWG00000003530
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447419.1 (4251629..4264624)

NW_020447419.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 2 Neighboring gene parathyroid hormone 2 receptor Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene uncharacterized LOC112977091 Neighboring gene chromosome unknown C2orf80 homolog Neighboring gene shugoshin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447419 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic
Names
isocitrate dehydrogenase (NADP(+)) 1, cytosolic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447419.1 Reference aptRow1

    Range
    4251629..4264624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026088992.1 → XP_025944777.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 412
    PTZ00435; isocitrate dehydrogenase; Provisional

  2. XM_026089028.1 → XP_025944813.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2

    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 349
    PTZ00435; isocitrate dehydrogenase; Provisional

  3. XM_026089040.1 → XP_025944825.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X3

    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 338
    PTZ00435; isocitrate dehydrogenase; Provisional

  4. XM_026089012.1 → XP_025944797.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

    Related
    ENSARWP00000004891.1, ENSARWT00000005621.1
    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 412
    PTZ00435; isocitrate dehydrogenase; Provisional

  5. XM_026089002.1 → XP_025944787.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 412
    PTZ00435; isocitrate dehydrogenase; Provisional

  6. XM_026089018.1 → XP_025944803.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

    Conserved Domains (1) summary
    PTZ00435
    Location:4 → 412
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
Heading Accession and Version

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