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FAM20B FAM20B glycosaminoglycan xylosylkinase [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112975051, updated on 15-Mar-2024

Summary

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Gene symbol
FAM20B
Gene description
FAM20B glycosaminoglycan xylosylkinase
See related
Ensembl:ENSARWG00000003569
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See FAM20B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450927.1 (1427843..1447257)

NW_020450927.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112975085 Neighboring gene Ral GEF with PH domain and SH3 binding motif 2 Neighboring gene angiopoietin like 1 Neighboring gene uncharacterized LOC112975052 Neighboring gene torsin family 3 member A Neighboring gene ABL proto-oncogene 2, non-receptor tyrosine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450927 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphotransferase activity, alcohol group as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycosaminoglycan xylosylkinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450927.1 Reference aptRow1

    Range
    1427843..1447257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026084668.1 → XP_025940453.1  glycosaminoglycan xylosylkinase isoform X1

    Related
    ENSARWP00000004954.1, ENSARWT00000005692.1
    Conserved Domains (1) summary
    cd10470
    Location:188 → 394
    FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

  2. XM_026084669.1 → XP_025940454.1  glycosaminoglycan xylosylkinase isoform X2

    Conserved Domains (1) summary
    cd10470
    Location:159 → 365
    FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

RNA

  1. XR_003256473.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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