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HPGDS hematopoietic prostaglandin D synthase [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112974835, updated on 15-Mar-2024

Summary

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Gene symbol
HPGDS
Gene description
hematopoietic prostaglandin D synthase
See related
Ensembl:ENSARWG00000008733
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See HPGDS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450905.1 (1912650..1930919, complement)

NW_020450905.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor delta type subunit 2 Neighboring gene SNF2 related chromatin remodeling ATPase with DExD box 1 Neighboring gene melanopsin-like Neighboring gene PDZ and LIM domain protein 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450905 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutathione metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hematopoietic prostaglandin D synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450905.1 Reference aptRow1

    Range
    1912650..1930919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026084204.1 → XP_025939989.1  hematopoietic prostaglandin D synthase

    Related
    ENSARWP00000012619.1, ENSARWT00000014396.1
    Conserved Domains (2) summary
    cd10295
    Location:82 → 181
    GST_C_Sigma; C-terminal, alpha helical domain of Class Sigma Glutathione S-transferases
    cd03039
    Location:4 → 73
    GST_N_Sigma_like; GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of ...
Nucleotide Protein
Heading Accession and Version

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