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HADH hydroxyacyl-CoA dehydrogenase [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112972205, updated on 15-Mar-2024

Summary

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Gene symbol
HADH
Gene description
hydroxyacyl-CoA dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See HADH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450738.1 (3293696..3319287)

NW_020450738.1Genomic Context describing neighboring genes Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene sphingomyelin synthase 2 Neighboring gene cytochrome P450 2U1 Neighboring gene uncharacterized LOC112972218 Neighboring gene lymphoid enhancer binding factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450738 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450738.1 Reference aptRow1

    Range
    3293696..3319287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026078396.1 → XP_025934181.1  hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

    Conserved Domains (1) summary
    COG1250
    Location:106 → 374
    FadB; 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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