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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112966439, updated on 15-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
See related
Ensembl:ENSARWG00000012450
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448775.1 (1072100..1123809)

NW_020448775.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene propionyl-CoA carboxylase alpha chain, mitochondrial-like Neighboring gene gamma-glutamylamine cyclotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020448775 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020448775.1 Reference aptRow1

    Range
    1072100..1123809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026066546.1 → XP_025922331.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:479 → 715
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_026066547.1 → XP_025922332.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    Related
    ENSARWP00000018576.1, ENSARWT00000021116.1
    Conserved Domains (3) summary
    COG0457
    Location:479 → 715
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_026066548.1 → XP_025922333.1  transmembrane and TPR repeat-containing protein 4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:479 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_026066549.1 → XP_025922334.1  transmembrane and TPR repeat-containing protein 4 isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:425 → 661
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:426 → 454
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:252 → 310
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_026066551.1 → XP_025922336.1  transmembrane and TPR repeat-containing protein 4 isoform X5

    Conserved Domains (3) summary
    COG0457
    Location:394 → 630
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:395 → 423
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:228 → 279
    DUF1736; Domain of unknown function (DUF1736)

  6. XM_026066550.1 → XP_025922335.1  transmembrane and TPR repeat-containing protein 4 isoform X4

    Related
    ENSARWP00000018505.1, ENSARWT00000021039.1
    Conserved Domains (3) summary
    COG0457
    Location:479 → 667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  7. XM_026066555.1 → XP_025922340.1  transmembrane and TPR repeat-containing protein 4 isoform X7

    Conserved Domains (3) summary
    COG0457
    Location:358 → 594
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:359 → 387
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:171 → 243
    DUF1736; Domain of unknown function (DUF1736)

  8. XM_026066553.1 → XP_025922338.1  transmembrane and TPR repeat-containing protein 4 isoform X6

    Conserved Domains (3) summary
    COG0457
    Location:291 → 527
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:292 → 320
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:104 → 176
    DUF1736; Domain of unknown function (DUF1736)

  9. XM_026066552.1 → XP_025922337.1  transmembrane and TPR repeat-containing protein 4 isoform X6

    Conserved Domains (3) summary
    COG0457
    Location:291 → 527
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:292 → 320
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:104 → 176
    DUF1736; Domain of unknown function (DUF1736)

RNA

  1. XR_003253606.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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