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DSE dermatan sulfate epimerase [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112966157, updated on 15-Mar-2024

Summary

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Gene symbol
DSE
Gene description
dermatan sulfate epimerase
See related
Ensembl:ENSARWG00000010714
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See DSE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448697.1 (182784..220891)

NW_020448697.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase domain-containing protein 1-like Neighboring gene uncharacterized LOC112966155 Neighboring gene uncharacterized LOC112966156 Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene trafficking protein particle complex subunit 3L Neighboring gene calcium homeostasis modulator family member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020448697 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chondroitin-glucuronate 5-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dermatan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dermatan-sulfate epimerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020448697.1 Reference aptRow1

    Range
    182784..220891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026065955.1 → XP_025921740.1  dermatan-sulfate epimerase isoform X4

  2. XM_026065952.1 → XP_025921737.1  dermatan-sulfate epimerase isoform X1

    Related
    ENSARWP00000015517.1, ENSARWT00000017702.1

  3. XM_026065954.1 → XP_025921739.1  dermatan-sulfate epimerase isoform X3

  4. XM_026065953.1 → XP_025921738.1  dermatan-sulfate epimerase isoform X2

    Related
    ENSARWP00000015518.1, ENSARWT00000017703.1

RNA

  1. XR_003253527.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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