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CERS1 ceramide synthase 1 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112965583, updated on 15-Mar-2024

Summary

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Gene symbol
CERS1
Gene description
ceramide synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See CERS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448531.1 (90254..94719, complement)

NW_020448531.1Genomic Context describing neighboring genes Neighboring gene cartilage oligomeric matrix protein Neighboring gene UPF1 RNA helicase and ATPase Neighboring gene growth differentiation factor 1 Neighboring gene COPI coat complex subunit epsilon Neighboring gene DEAD-box helicase 49 Neighboring gene homer scaffold protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020448531 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ceramide synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020448531.1 Reference aptRow1

    Range
    90254..94719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026064719.1 → XP_025920504.1  ceramide synthase 1 isoform X2

    Conserved Domains (1) summary
    pfam03798
    Location:1 → 205
    TRAM_LAG1_CLN8; TLC domain

  2. XM_026064718.1 → XP_025920503.1  ceramide synthase 1 isoform X1

    Conserved Domains (1) summary
    pfam03798
    Location:9 → 162
    TRAM_LAG1_CLN8; TLC domain
Nucleotide Protein
Heading Accession and Version

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