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CHID1 chitinase domain containing 1 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112962714, updated on 15-Mar-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
See related
Ensembl:ENSARWG00000008165
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447775.1 (63171..190759)

NW_020447775.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene uncharacterized LOC112962684 Neighboring gene uncharacterized LOC112962685 Neighboring gene tetraspanin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447775 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447775.1 Reference aptRow1

    Range
    63171..190759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026059152.1 → XP_025914937.1  chitinase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cd02876
    Location:82 → 330
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  2. XM_026059153.1 → XP_025914938.1  chitinase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cd02876
    Location:82 → 330
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  3. XM_026059151.1 → XP_025914936.1  chitinase domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cd02876
    Location:82 → 325
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  4. XM_026059149.1 → XP_025914934.1  chitinase domain-containing protein 1 isoform X1

    Related
    ENSARWP00000011810.1, ENSARWT00000013451.1
    Conserved Domains (1) summary
    cd02876
    Location:82 → 398
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  5. XM_026059150.1 → XP_025914935.1  chitinase domain-containing protein 1 isoform X1

    Related
    ENSARWP00000011812.1, ENSARWT00000013453.1
    Conserved Domains (1) summary
    cd02876
    Location:82 → 398
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
Nucleotide Protein
Heading Accession and Version

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