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COLEC12 collectin subfamily member 12 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112962465, updated on 15-Mar-2024

Summary

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Gene symbol
COLEC12
Gene description
collectin subfamily member 12
See related
Ensembl:ENSARWG00000013511
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See COLEC12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447741.1 (450332..468356)

NW_020447741.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112962463 Neighboring gene thymidylate synthetase Neighboring gene clusterin like 1 Neighboring gene THO complex 1 Neighboring gene ubiquitin specific peptidase 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447741 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pattern recognition receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447741.1 Reference aptRow1

    Range
    450332..468356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026058647.1 → XP_025914432.1  collectin-12

    Related
    ENSARWP00000019714.1, ENSARWT00000022368.1
    Conserved Domains (2) summary
    cd03590
    Location:593 → 718
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    cl25732
    Location:64 → 322
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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