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HEXB hexosaminidase subunit beta [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112961805, updated on 15-Mar-2024

Summary

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Gene symbol
HEXB
Gene description
hexosaminidase subunit beta
See related
Ensembl:ENSARWG00000014538
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See HEXB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447630.1 (644141..674775, complement)

NW_020447630.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 169 member A Neighboring gene NSA2 ribosome biogenesis factor Neighboring gene GTP dependent ribosome recycling factor mitochondrial 2 Neighboring gene ectodermal-neural cortex 1 Neighboring gene Rho guanine nucleotide exchange factor 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447630 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylhexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosaminoglycan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-hexosaminidase subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447630.1 Reference aptRow1

    Range
    644141..674775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026057352.1 → XP_025913137.1  beta-hexosaminidase subunit beta

    Conserved Domains (2) summary
    cd06562
    Location:200 → 540
    GH20_HexA_HexB-like; Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the ...
    pfam14845
    Location:54 → 178
    Glycohydro_20b2; beta-acetyl hexosaminidase like

  2. XM_026057351.1 → XP_025913136.1  beta-hexosaminidase subunit beta

    Related
    ENSARWP00000021264.1, ENSARWT00000024111.1
    Conserved Domains (2) summary
    cd06562
    Location:200 → 540
    GH20_HexA_HexB-like; Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the ...
    pfam14845
    Location:54 → 178
    Glycohydro_20b2; beta-acetyl hexosaminidase like
Nucleotide Protein
Heading Accession and Version

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