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LOC112961596 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112961596, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112961596
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like
See related
Ensembl:ENSARWG00000010254
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
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Genomic context

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See LOC112961596 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447581.1 (35058..36521)

NW_020447581.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 1 Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene poly(U)-specific endoribonuclease-C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447581 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447581.1 Reference aptRow1

    Range
    35058..36521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026056932.1 → XP_025912717.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like

    Related
    ENSARWP00000014817.1, ENSARWT00000016911.1
    Conserved Domains (1) summary
    cl21608
    Location:159 → 247
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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