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DYSF dysferlin [ Nothoprocta perdicaria ]

Gene ID: 112955538, updated on 15-Mar-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
57
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455843.1 (3851833..3931617, complement)

NW_020455843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112955567 Neighboring gene uncharacterized LOC112955521 Neighboring gene zinc finger protein 638 Neighboring gene poly(A) binding protein interacting protein 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455843 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455843.1 Reference notPer1

    Range
    3851833..3931617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026048862.1 → XP_025904647.1  dysferlin

    Conserved Domains (11) summary
    cd04011
    Location:206 → 315
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1142 → 1270
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:369 → 543
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1592 → 1715
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:12 → 118
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1826 → 1957
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:936 → 992
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:777 → 849
    FerB; FerB (NUC096) domain
    pfam08151
    Location:313 → 363
    FerI; FerI (NUC094) domain
    pfam08165
    Location:706 → 744
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1970 → 2083
    Ferlin_C; Ferlin C-terminus
Nucleotide Protein
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