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SGCD sarcoglycan delta [ Nothoprocta perdicaria ]

Gene ID: 112954478, updated on 15-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455754.1 (6437367..6673736, complement)

NW_020455754.1Genomic Context describing neighboring genes Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene uncharacterized LOC112954492 Neighboring gene uncharacterized LOC112954480 Neighboring gene uncharacterized LOC112954479 Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455754 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455754.1 Reference notPer1

    Range
    6437367..6673736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026047658.1 → XP_025903443.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_026047661.1 → XP_025903446.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_026047659.1 → XP_025903444.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_026047660.1 → XP_025903445.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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